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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
ATAC-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
11
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
8
histone
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
7
August, 2017
4
December, 2017
4
February, 2023
2
August, 2021
2
October, 2019
1
February, 2021
Available data
759
bam
666
bigWig
487
fastq
423
bed narrowPeak
340
bigBed narrowPeak
250
tsv
46
bed broadPeak
46
bigBed broadPeak
23
tagAlign
20
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
20
Homo sapiens
Biosample type
193
tissue
34
primary cell
17
in vitro differentiated cells
3
cell line
1
stem cell
Organ
13
connective tissue
2
pancreas
1
embryo
1
liver
Project
20
AMP
Genome assembly (visualization)
20
hg19
13
GRCh38
Lab
18
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
4
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
pancreatic endoderm
1
preadipocyte
1
primitive gut cell
1
cell line
Panc1
1
1
HepG2
1
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