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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
16
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
7
histone
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
300
November, 2017
96
February, 2021
61
November, 2018
41
August, 2021
28
December, 2018
23
October, 2019
22
January, 2019
20
May, 2021
10
March, 2020
6
February, 2023
6
November, 2019
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bam
14
bigWig
9
bed narrowPeak
4
tsv
2
bed bed3+
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
23
Homo sapiens
Biosample type
74
tissue
23
cell line
13
primary cell
8
in vitro differentiated cells
Organ
15
kidney
8
pancreas
2
epithelium
Project
23
AMP
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
23
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
6
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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