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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
3
ChIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
12
histone
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
20
May, 2021
6
November, 2019
6
November, 2020
4
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
39
bam
38
bigWig
35
tsv
3
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
66
Homo sapiens
Biosample type
340
primary cell
67
cell line
15
tissue
9
in vitro differentiated cells
Organ
383
liver
73
pancreas
67
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
65
AMP
2
T1D
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
61
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
64
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
MeRIP-seq
ChIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
6
3
2
1
1
glomerular visceral epithelial cell
1
1
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