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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
9
total RNA-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
44
DNA binding
11
Transcription
Target of assay
35
histone
histone modification
32
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
23
May, 2021
8
February, 2018
7
August, 2017
7
August, 2021
4
December, 2017
4
February, 2023
4
January, 2018
2
December, 2019
2
March, 2020
1
August, 2018
Available data
25
bam
22
fastq
10
tagAlign
4
bigWig
4
tsv
1
bedpe bed3+
Organism
62
Homo sapiens
Biosample type
827
tissue
453
primary cell
131
cell line
62
in vitro differentiated cells
7
stem cell
Organ
12
connective tissue
7
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
62
AMP
Genome assembly (visualization)
hg19
187
GRCh38
4
hg18
Lab
40
AMP-T2D consortium
22
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
2
audit script error
target.investigated_as!
histone modification
assembly!
hg19
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
18
5
1
adipocyte
7
1
neural progenitor cell
7
pancreatic endoderm
4
1
cardiomyocytes (cardiac muscle cell)
1
2
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