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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
86
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
32
May, 2021
31
August, 2017
21
August, 2021
19
December, 2017
16
February, 2023
8
February, 2018
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
212
bam
181
bigWig
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
151
Homo sapiens
Biosample type
1068
tissue
581
primary cell
505
cell line
151
in vitro differentiated cells
4
stem cell
Organ
55
connective tissue
11
embryo
7
epithelium
3
liver
2
pancreas
1
adipose tissue
Project
151
AMP
Genome assembly (visualization)
93
hg19
60
GRCh38
4
hg18
Lab
117
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone modification
files.file_type!
tsv
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
30
8
1
1
1
embryonic stem cell
18
6
5
neural progenitor cell
7
10
pancreatic endoderm
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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