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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
56
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
56
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
histone
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
110
May, 2021
24
August, 2021
23
February, 2018
19
December, 2017
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
178
bam
149
bigWig
126
tsv
46
fastq
34
bed narrowPeak
12
tagAlign
6
bedpe bed3+
4
bed bed3+
4
hic
3
bed bedgraph
3
txt
2
bigBed narrowPeak
2
ibed
Organism
222
Homo sapiens
Biosample type
1635
tissue
820
primary cell
624
cell line
222
in vitro differentiated cells
7
stem cell
Organ
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
222
AMP
Genome assembly (visualization)
172
hg19
158
GRCh38
4
hg18
Lab
192
AMP-T2D consortium
27
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
4
inconsistent control read length
target.investigated_as!
histone modification
histone
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
222 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
8
1
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