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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
460
ATAC-seq
361
single cell RNA-seq
316
ChIP-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
758
DNA accessibility
316
DNA binding
96
DNA methylation
26
3D chromatin structure
Target of assay
histone modification
829
histone
424
narrow histone mark
405
broad histone mark
222
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
593
February, 2021
313
May, 2020
230
August, 2021
200
May, 2022
199
June, 2019
183
February, 2023
181
August, 2017
168
July, 2018
128
May, 2021
108
July, 2019
87
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
43
December, 2017
41
September, 2018
40
November, 2019
39
March, 2020
28
May, 2019
27
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
18
November, 2017
16
January, 2021
15
May, 2023
11
October, 2017
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
January, 2019
1
March, 2023
Available data
1847
bam
1628
bigWig
1346
tsv
639
fastq
538
bed narrowPeak
311
bigBed narrowPeak
227
bed bed3+
211
bed broadPeak
209
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
54
tagAlign
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tar
Organism
2992
Homo sapiens
Biosample type
2144
tissue
851
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
720
pancreas
545
connective tissue
458
adipose tissue
355
epithelium
305
kidney
302
liver
224
heart
159
bone element
99
brain
99
vasculature
94
blood vessel
73
limb
63
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2455
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1715
hg19
1698
GRCh38
Lab
2233
AMP-T2D consortium
324
Klaus Kaestner, Upenn
177
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
126
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
2995 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
298
68
20
1
7
4
3
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
1
80
2
3
1
1
1
1
kidney
49
75
64
7
13
6
1
1
1
bone element
84
+ See 118 more…
primary cell
pancreatic alpha cell
52
35
12
6
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
6
16
1
monocyte
54
15
1
1
exocrine cell
39
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