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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
RRBS
4
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
58
DNA methylation
42
DNA binding
4
3D chromatin structure
Target of assay
237
histone
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
November, 2018
Available data
406
bam
383
bigWig
336
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
845
Homo sapiens
Biosample type
2133
tissue
845
primary cell
622
cell line
278
in vitro differentiated cells
8
stem cell
Organ
335
epithelium
285
pancreas
31
connective tissue
26
kidney
18
brain
18
vasculature
13
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
5
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
404
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
393
hg19
337
GRCh38
Lab
399
AMP-T2D consortium
321
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
27
audit script error
target.investigated_as!
histone modification
files.file_type!
hic
BIOSAMPLE
ASSAY
845 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
monocyte
54
15
1
1
exocrine cell
39
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