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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
274
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
307
DNA accessibility
274
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1278
bam
1082
bigWig
1076
tsv
303
fastq
296
bed narrowPeak
157
txt
86
bigBed narrowPeak
64
xls
52
tagAlign
30
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
15
bed broadPeak
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1978
Homo sapiens
Biosample type
1981
tissue
815
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
428
pancreas
291
liver
211
kidney
186
heart
158
bone element
76
blood vessel
76
vasculature
56
brain
51
artery
51
eye
41
limb
25
musculature of body
20
lung
19
nerve
19
spleen
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1886
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1197
GRCh38
1170
hg19
Lab
1669
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
month_released!
June, 2019
BIOSAMPLE
ASSAY
1981 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
20
68
7
4
3
1
1
1
4
adipose tissue
382
1
3
3
1
liver
167
80
20
1
3
1
1
1
2
1
kidney
49
7
75
64
6
1
1
1
bone element
84
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