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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
44
ChIP-seq
2
ATAC-seq
Assay category
180
DNA accessibility
44
DNA binding
Target of assay
49
histone
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
44
November, 2017
9
November, 2018
5
October, 2019
1
August, 2017
1
March, 2019
1
October, 2017
Available data
2201
bam
1912
bigWig
1330
tsv
882
bed narrowPeak
792
fastq
589
bigBed narrowPeak
224
bed broadPeak
222
bigBed broadPeak
214
bed bed3+
161
txt
75
tagAlign
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
224
Homo sapiens
Biosample type
178
tissue
45
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
47
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
9
pancreas
5
blood vessel
5
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
224
AMP
Genome assembly (visualization)
211
GRCh38
207
hg19
Lab
222
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
inconsistent control read length
target.investigated_as!
histone modification
biosample_type!
primary cell
BIOSAMPLE
ASSAY
224 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
44
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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