Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
11
ChIP-seq
Assay category
106
DNA accessibility
11
DNA binding
Target of assay
117
histone
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
77
August, 2021
38
May, 2022
2
February, 2023
Available data
195
fastq
153
bigWig
153
zippedFastqFolder
121
bam
117
bed narrowPeak
112
tsv
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
117
Homo sapiens
Biosample type
102
tissue
11
cell line
4
in vitro differentiated cells
Organ
64
kidney
31
liver
18
pancreas
2
connective tissue
Project
117
AMP
Genome assembly (visualization)
64
GRCh38
53
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
117 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
liver
20
islet of Langerhans
18
cell line
HepG2
11
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
Download