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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
6
Transcription
1
DNA methylation
Target of assay
27
histone
histone modification
16
broad histone mark
11
narrow histone mark
Date released
33
June, 2019
5
July, 2019
2
March, 2020
1
January, 2018
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
41
Homo sapiens
Biosample type
38
tissue
3
primary cell
Organ
539
liver
535
connective tissue
481
pancreas
423
adipose tissue
211
epithelium
122
heart
101
kidney
87
vasculature
83
blood vessel
65
artery
58
bone element
56
brain
54
blood
54
bodily fluid
43
limb
41
musculature of body
18
embryo
18
ureter
10
spleen
7
nerve
5
eye
3
vein
1
pericardium
Project
41
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
41 results
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DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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