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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
177
DNase-seq
93
ChIP-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
11
Hi-C
4
FAIRE-seq
Assay category
917
Transcription
224
DNA accessibility
93
DNA binding
16
DNA methylation
11
3D chromatin structure
Target of assay
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
143
May, 2020
118
August, 2017
116
July, 2018
63
July, 2019
38
May, 2021
31
December, 2017
23
November, 2018
20
May, 2022
20
November, 2019
16
March, 2020
16
October, 2019
15
October, 2018
8
October, 2017
6
April, 2018
5
April, 2019
5
May, 2024
4
May, 2019
3
December, 2018
2
January, 2018
1
August, 2021
1
March, 2019
Available data
1441
bam
1250
bigWig
1076
tsv
464
bed narrowPeak
303
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1261
Homo sapiens
Biosample type
1261
tissue
487
cell line
389
primary cell
185
in vitro differentiated cells
1
stem cell
Organ
479
connective tissue
421
adipose tissue
311
pancreas
216
liver
72
kidney
65
heart
58
bone element
43
limb
40
musculature of body
39
brain
18
ureter
17
blood vessel
17
vasculature
10
spleen
7
artery
7
nerve
3
eye
Project
1261
AMP
Genome assembly (visualization)
1222
hg19
1221
GRCh38
Lab
1233
AMP-T2D consortium
20
Karen Mohlke, UNC
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1261 results
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total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
1
7
3
2
1
liver
147
2
37
20
1
1
bone tissue
58
heart
4
18
1
1
1
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