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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
345
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
84
histone
histone modification
81
recombinant protein
55
RNA binding protein
50
narrow histone mark
34
broad histone mark
28
control
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
237
November, 2017
51
November, 2018
33
December, 2017
23
May, 2020
4
August, 2017
2
June, 2019
1
August, 2021
Available data
601
bam
539
bigWig
420
fastq
360
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
351
Homo sapiens
Biosample type
281
cell line
65
tissue
3
primary cell
2
in vitro differentiated cells
Organ
351
liver
82
kidney
55
brain
53
blood
53
bodily fluid
50
epithelium
46
pancreas
44
heart
36
limb
35
musculature of body
23
vasculature
22
connective tissue
20
blood vessel
18
ureter
11
artery
10
adipose tissue
7
spleen
5
eye
3
vein
2
nerve
Project
351
AMP
Genome assembly (visualization)
320
hg19
291
GRCh38
Lab
351
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
351 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
281
tissue
liver
59
2
right lobe of liver
2
1
1
primary cell
hepatocyte
1
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
2
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