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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
440
bam
422
bigWig
401
tsv
43
fastq
10
bed narrowPeak
8
bigBed narrowPeak
5
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
tagAlign
Organism
457
Homo sapiens
Biosample type
455
tissue
2
primary cell
1
in vitro differentiated cells
Organ
791
pancreas
686
liver
596
connective tissue
458
adipose tissue
413
epithelium
258
heart
244
kidney
159
bone element
158
vasculature
155
blood vessel
119
artery
69
brain
68
blood
68
bodily fluid
52
eye
41
limb
28
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
458
AMP
Genome assembly (visualization)
423
hg19
422
GRCh38
Lab
458
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
month_released!
June, 2019
BIOSAMPLE
ASSAY
458 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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