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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
2
Hi-C
1
whole genome sequencing assay
Assay category
57
Transcription
15
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
47
September, 2023
33
August, 2021
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
1
hic
1
vcf
Organism
80
Homo sapiens
Biosample type
49
tissue
31
cell line
Organ
49
kidney
28
liver
2
pancreas
Project
47
KPMP
33
AMP
Genome assembly (visualization)
12
hg19
Lab
3067
AMP-T2D consortium
324
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
month_released!
March, 2019
BIOSAMPLE
ASSAY
80 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
47
islet of Langerhans
1
1
cell line
HepG2
15
9
2
1
1
HEK293T
2
Synthesized DNA
1
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