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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
7
Transcription
6
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
10
July, 2019
7
August, 2017
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
41
bam
39
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
2
tagAlign
1
txt
Organism
58
Homo sapiens
Biosample type
52
tissue
6
primary cell
Organ
784
pancreas
685
liver
604
connective tissue
458
adipose tissue
426
epithelium
322
kidney
284
heart
161
vasculature
159
bone element
156
blood vessel
121
artery
97
brain
73
limb
68
blood
68
bodily fluid
58
eye
58
musculature of body
25
embryo
19
lung
19
nerve
18
spleen
18
ureter
16
skeleton
6
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
58
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone modification
month_released!
March, 2020
BIOSAMPLE
ASSAY
58 results
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DNase-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
4
1
1
1
1
1
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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