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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
40
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
58
DNA methylation
40
DNA binding
10
3D chromatin structure
Target of assay
234
histone
histone modification
120
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
404
bam
382
bigWig
336
fastq
270
tsv
153
zippedFastqFolder
78
bed narrowPeak
61
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
849
Homo sapiens
Biosample type
2123
tissue
849
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
338
epithelium
288
pancreas
31
connective tissue
24
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
404
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
397
hg19
337
GRCh38
Lab
399
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
target.investigated_as!
histone modification
month_released!
May, 2019
BIOSAMPLE
ASSAY
849 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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