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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
16
ChIP-seq
Assay category
106
DNA accessibility
16
DNA binding
Target of assay
152
histone
histone modification
85
broad histone mark
67
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
77
August, 2021
38
May, 2022
5
May, 2024
2
February, 2023
Available data
195
fastq
158
bigWig
153
zippedFastqFolder
122
bed narrowPeak
121
bam
112
tsv
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
122
Homo sapiens
Biosample type
107
tissue
11
cell line
4
in vitro differentiated cells
Organ
64
kidney
31
liver
18
pancreas
5
heart
2
connective tissue
Project
122
AMP
Genome assembly (visualization)
69
GRCh38
53
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
month_released!
May, 2019
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
122 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
liver
20
islet of Langerhans
18
left cardiac atrium
5
cell line
HepG2
11
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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