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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
total RNA-seq
23
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
24
Transcription
23
DNA binding
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
306
November, 2017
219
May, 2021
170
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
70
August, 2021
62
November, 2018
59
September, 2020
52
August, 2017
48
July, 2018
44
October, 2019
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
28
December, 2018
23
February, 2018
23
March, 2020
22
January, 2019
20
December, 2017
12
November, 2020
11
November, 2019
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
May, 2019
2
October, 2018
Available data
33
bam
28
bigWig
24
tsv
23
bed narrowPeak
8
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
70
Homo sapiens
Biosample type
tissue
41
cell line
28
in vitro differentiated cells
1
primary cell
Organ
29
liver
8
embryo
4
connective tissue
3
epithelium
2
kidney
2
pancreas
Project
70
AMP
Genome assembly (visualization)
41
hg19
25
GRCh38
Lab
35
AMP-T2D consortium
31
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone modification
biosample_type!
tissue
BIOSAMPLE
ASSAY
70 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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