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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
25
ChIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
82
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
21
histone
histone modification
14
transcription factor
11
broad histone mark
11
control
10
narrow histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
712
February, 2021
270
August, 2021
259
May, 2021
205
February, 2023
197
June, 2019
191
August, 2017
168
July, 2018
160
May, 2022
147
May, 2020
116
October, 2019
98
July, 2019
59
September, 2020
58
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
November, 2018
34
December, 2018
28
May, 2019
24
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
January, 2019
18
November, 2017
17
December, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
114
tsv
90
bed narrowPeak
64
xls
57
txt
50
bam
31
bigWig
18
fastq
14
bigBed narrowPeak
7
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
287
Homo sapiens
Biosample type
230
tissue
30
cell line
28
in vitro differentiated cells
Organ
130
kidney
92
heart
liver
17
blood
17
bodily fluid
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
spleen
Project
288
AMP
Genome assembly (visualization)
103
GRCh38
44
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
liver
BIOSAMPLE
ASSAY
288 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
GM12878
17
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
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