Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
88
DNA binding
10
DNA accessibility
7
DNA methylation
6
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
110
bam
99
bigWig
87
bed narrowPeak
87
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
111
Homo sapiens
Biosample type
83
cell line
27
tissue
1
primary cell
Organ
58
liver
32
blood
32
bodily fluid
10
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
111
AMP
Genome assembly (visualization)
98
GRCh38
90
hg19
Lab
111
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
111 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
5
GM12878
32
tissue
spleen
7
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic cell
1
See all biosamples
Download