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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
318
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
244
transcription factor
88
histone
histone modification
76
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
323
bam
306
fastq
264
bigWig
241
bed narrowPeak
240
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
11
tagAlign
4
tsv
3
tar
1
bed bed3+
Organism
334
Homo sapiens
Biosample type
306
cell line
16
tissue
12
primary cell
Organ
300
liver
18
brain
10
epithelium
10
pancreas
6
connective tissue
4
vasculature
2
blood vessel
Project
334
AMP
Genome assembly (visualization)
263
hg19
213
GRCh38
Lab
324
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
334 results
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ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
300
EndoC_BH1
6
tissue
islet of Langerhans
4
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 2 more…
primary cell
osteoblast
4
1
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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