Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
3
ChIP-seq
Assay category
107
DNA accessibility
60
Transcription
41
DNA methylation
3
DNA binding
Target of assay
12
histone
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
44
bed narrowPeak
34
fastq
33
bam
28
bigWig
7
txt
2
tagAlign
1
bed bed3+
1
bed broadPeak
Organism
211
Homo sapiens
Biosample type
134
primary cell
77
tissue
Organ
109
pancreas
80
epithelium
40
liver
4
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
spleen
Project
134
HPAP
77
AMP
Genome assembly (visualization)
46
hg19
8
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
12
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
211 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
19
6
body of pancreas
4
brain
3
skeletal muscle tissue
1
1
+ See 3 more…
See all biosamples
Download