Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
6
Transcription
4
DNA accessibility
Date released
7
May, 2022
3
February, 2023
1
October, 2022
Available data
2427
bam
2141
bigWig
1518
tsv
1128
fastq
805
bed narrowPeak
569
bigBed narrowPeak
179
bed broadPeak
177
bigBed broadPeak
170
bed bed3+
153
zippedFastqFolder
77
tagAlign
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
11
txt
8
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
vcf
Organism
10
Homo sapiens
Biosample type
7
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
4
hg19
Lab
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
11 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
Download