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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
30
DNase-seq
17
ChIP-seq
Assay category
77
DNA accessibility
17
DNA binding
Target of assay
97
histone
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
35
February, 2023
31
June, 2019
12
February, 2021
5
April, 2019
5
May, 2024
4
July, 2019
2
May, 2019
Available data
168
tsv
150
bam
127
bigWig
94
bed narrowPeak
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
94
Homo sapiens
Biosample type
78
tissue
12
cell line
4
primary cell
Organ
360
liver
153
kidney
94
heart
87
pancreas
67
vasculature
64
blood vessel
63
epithelium
54
artery
53
blood
53
bodily fluid
44
limb
40
connective tissue
36
brain
33
musculature of body
32
eye
18
ureter
11
adipose tissue
bone element
8
skeleton
8
spleen
3
embryo
3
nerve
3
vein
Project
94
AMP
Genome assembly (visualization)
94
GRCh38
51
hg19
Lab
89
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
bone element
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
DNase-seq
ChIP-seq
tissue
coronary artery
36
2
1
heart
18
heart left ventricle
2
3
5
left cardiac atrium
1
5
right atrium auricular region
1
2
1
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cell line
smooth muscle cell of the coronary artery
8
4
primary cell
cardiac fibroblast
3
1
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