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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
7
ChIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
171
Transcription
82
DNA accessibility
7
DNA binding
2
3D chromatin structure
Target of assay
14
histone
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
712
February, 2021
270
August, 2021
259
May, 2021
205
February, 2023
197
June, 2019
191
August, 2017
168
July, 2018
160
May, 2022
147
May, 2020
116
October, 2019
98
July, 2019
59
September, 2020
58
March, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
November, 2018
34
December, 2018
28
May, 2019
24
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
January, 2019
18
November, 2017
17
December, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
114
tsv
76
bed narrowPeak
64
xls
57
txt
32
bam
17
bigWig
7
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
269
Homo sapiens
Biosample type
229
tissue
28
in vitro differentiated cells
13
cell line
Organ
130
kidney
92
heart
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
270
AMP
Genome assembly (visualization)
89
GRCh38
30
hg19
Lab
133
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
liver
BIOSAMPLE
ASSAY
270 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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