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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
37
ChIP-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
77
DNA accessibility
37
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
36
February, 2023
33
June, 2019
15
April, 2019
15
July, 2019
14
February, 2021
8
May, 2019
5
March, 2020
5
May, 2024
1
October, 2019
Available data
96
tsv
94
bed narrowPeak
81
bam
58
bigWig
38
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
224
Homo sapiens
Biosample type
203
tissue
14
cell line
7
primary cell
Organ
499
liver
398
pancreas
300
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
101
GRCh38
57
hg19
Lab
219
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
spinal cord
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
224 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
coronary artery
36
3
2
heart left ventricle
18
2
11
3
4
1
1
1
heart
1
2
18
1
1
1
heart right ventricle
17
2
1
2
1
1
left cardiac atrium
18
5
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
cardiac fibroblast
3
3
1
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