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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1036
total RNA-seq
279
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1226
Transcription
468
DNA accessibility
279
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
229
August, 2021
166
May, 2020
162
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
39
November, 2019
36
March, 2020
26
May, 2019
26
November, 2018
24
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1439
bam
1249
bigWig
1073
tsv
462
bed narrowPeak
303
fastq
248
bigBed narrowPeak
192
bed bed3+
177
bed broadPeak
175
bigBed broadPeak
73
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2057
Homo sapiens
Biosample type
2060
tissue
814
primary cell
544
cell line
169
in vitro differentiated cells
7
stem cell
Organ
513
connective tissue
455
adipose tissue
432
pancreas
291
liver
279
kidney
218
heart
80
brain
79
blood vessel
79
vasculature
74
bone element
72
limb
56
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
1965
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1363
GRCh38
1315
hg19
Lab
1743
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
organ_slims!
stomach
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
2060 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
298
20
68
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
80
20
2
1
3
1
1
1
1
kidney
49
7
75
13
64
6
1
1
1
bone tissue
58
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