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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
36
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
36
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
16
August, 2017
12
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
441
Homo sapiens
Biosample type
439
tissue
2
primary cell
Organ
601
liver
559
connective tissue
552
pancreas
441
adipose tissue
224
epithelium
150
heart
114
kidney
114
vasculature
110
blood vessel
82
artery
77
brain
66
bone element
66
limb
59
blood
59
bodily fluid
43
musculature of body
24
embryo
18
nerve
18
spleen
18
ureter
8
skeleton
6
eye
5
vein
1
pericardium
Project
441
AMP
Genome assembly (visualization)
422
GRCh38
420
hg19
Lab
441
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
441 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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