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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
18
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
18
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
386
February, 2021
25
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
418
bam
418
bigWig
401
tsv
20
fastq
6
bed bed3+
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
435
Homo sapiens
Biosample type
433
tissue
2
primary cell
1
in vitro differentiated cells
Organ
772
pancreas
688
liver
583
connective tissue
436
adipose tissue
429
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
436
AMP
Genome assembly (visualization)
419
hg19
418
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
month_released!
October, 2018
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
5
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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