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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
76
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
32
June, 2019
27
December, 2018
26
October, 2019
17
January, 2019
15
November, 2018
8
January, 2021
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
May, 2019
Available data
125
bam
97
bed narrowPeak
97
bigWig
89
bigBed narrowPeak
59
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
141
Homo sapiens
Biosample type
73
tissue
60
cell line
8
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
133
AMP
8
T1D
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
133
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
2
1
5
muscle of arm
17
muscle of leg
1
13
1
tibial artery
5
2
1
1
gastrocnemius medialis
1
4
+ See 8 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
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