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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
29
ChIP-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
62
Transcription
54
DNA accessibility
29
DNA binding
3
3D chromatin structure
Target of assay
70
histone
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
35
February, 2023
14
May, 2019
14
October, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
2
November, 2017
Available data
101
bam
73
bigWig
63
tsv
62
bed narrowPeak
14
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
1
tar
Organism
149
Homo sapiens
Biosample type
72
tissue
66
cell line
11
primary cell
Organ
789
pancreas
678
liver
588
connective tissue
447
adipose tissue
418
epithelium
313
kidney
266
heart
159
bone element
153
vasculature
149
blood vessel
118
artery
81
brain
68
blood
68
bodily fluid
68
limb
57
eye
53
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
114
GRCh38
83
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone modification
month_released!
July, 2019
BIOSAMPLE
ASSAY
149 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
1
35
3
2
aorta
1
2
4
1
1
tibial artery
1
1
5
2
ascending aorta
1
4
1
thoracic aorta
5
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
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