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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
20
DNA binding
12
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
14
October, 2019
11
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
June, 2019
2
February, 2020
2
November, 2017
Available data
36
bam
21
bigWig
13
bed narrowPeak
13
tsv
11
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
50
Homo sapiens
Biosample type
37
tissue
13
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
22
hg19
17
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone modification
organ_slims!
heart
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
aorta
2
4
1
1
2
1
tibial artery
5
2
1
1
thoracic aorta
5
2
1
ascending aorta
4
1
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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