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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
81
Transcription
44
DNA accessibility
2
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
72
bam
63
bigWig
63
tsv
40
bed narrowPeak
5
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
217
Homo sapiens
Biosample type
212
tissue
5
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
216
AMP
1
T1D
Genome assembly (visualization)
103
hg19
71
GRCh38
Lab
216
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
small intestine
BIOSAMPLE
ASSAY
217 results
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RNA microarray
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
ChIP-seq
RRBS
tissue
bone element
84
bone tissue
58
retina
3
15
3
islet of Langerhans
14
1
4
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
1
2
1
megakaryocyte
1
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