Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
79
total RNA-seq
32
DNase-seq
28
ChIP-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
86
Transcription
49
DNA accessibility
28
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
February, 2023
9
October, 2019
4
October, 2017
May, 2019
2
March, 2020
2
November, 2018
1
May, 2021
Available data
140
bam
114
bigWig
88
txt
84
tsv
44
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
19
tagAlign
11
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
255
Homo sapiens
Biosample type
236
tissue
19
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
429
epithelium
322
kidney
288
heart
159
bone element
151
vasculature
146
blood vessel
118
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
254
AMP
1
T1D
Genome assembly (visualization)
117
hg19
115
GRCh38
Lab
254
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
target.investigated_as!
histone modification
month_released!
May, 2019
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
1
14
3
1
1
cerebellum (Hemisphere)
1
1
2
1
1
frontal cortex
2
2
1
1
+ See 42 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
See all biosamples
Download