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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
33
DNase-seq
13
ATAC-seq
6
ChIP-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
71
Transcription
47
DNA accessibility
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
150
February, 2021
35
June, 2019
10
July, 2019
8
February, 2023
7
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
1
May, 2021
Available data
109
bam
99
bigWig
89
txt
67
tsv
41
bed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
33
bigBed narrowPeak
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
222
Homo sapiens
Biosample type
215
tissue
7
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
1
T1D
Genome assembly (visualization)
116
hg19
106
GRCh38
Lab
221
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
222 results
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RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
1
3
4
1
1
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
megakaryocyte
1
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