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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
37
DNA accessibility
31
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
8
October, 2019
7
July, 2019
4
October, 2017
3
May, 2019
2
November, 2018
1
February, 2023
Available data
77
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
73
Homo sapiens
Biosample type
58
tissue
15
primary cell
Organ
514
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
123
heart
101
bone element
97
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
73
AMP
Genome assembly (visualization)
37
GRCh38
35
hg19
Lab
73
AMP-T2D consortium
target.investigated_as!
histone modification
files.file_type!
tsv
BIOSAMPLE
ASSAY
73 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
14
3
1
1
cerebellum (Hemisphere)
1
2
1
caudate nucleus
1
2
frontal cortex
2
1
layer of hippocampus
3
+ See 21 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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