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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
28
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
28
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
July, 2019
18
November, 2017
12
February, 2020
9
October, 2019
4
October, 2017
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
74
bam
56
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
96
Homo sapiens
Biosample type
78
tissue
18
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
429
epithelium
322
kidney
283
heart
159
bone element
151
vasculature
146
blood vessel
118
artery
96
brain
72
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
96
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
month_released!
May, 2019
BIOSAMPLE
ASSAY
96 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
Ammon's horn
1
1
1
+ See 28 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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