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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
27
ChIP-seq
21
total RNA-seq
8
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
44
DNA accessibility
27
DNA binding
21
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
61
histone
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
32
June, 2019
26
October, 2019
8
August, 2021
7
December, 2017
7
February, 2018
6
February, 2021
5
July, 2019
3
February, 2020
2
May, 2021
1
January, 2018
1
May, 2019
Available data
90
bam
61
bigWig
47
bed narrowPeak
37
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
21
tsv
15
fastq
1
bed bedMethyl
1
bigBed bedMethyl
Organism
98
Homo sapiens
Biosample type
73
tissue
17
in vitro differentiated cells
8
cell line
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
67
GRCh38
66
hg19
1
hg18
Lab
98
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
98 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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in vitro differentiated cells
pancreatic endoderm
8
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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