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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
36
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
24
October, 2019
5
July, 2019
3
February, 2020
1
May, 2019
Available data
58
bam
41
bigWig
36
bed bed3+
36
bed broadPeak
36
bed narrowPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
65
tissue
Organ
665
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
kidney
244
heart
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
41
GRCh38
40
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
65 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
5
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
gastrocnemius medialis
1
4
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