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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
17
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
22
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
30
bam
8
bed narrowPeak
7
bigWig
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
787
pancreas
682
liver
597
connective tissue
457
adipose tissue
412
epithelium
261
heart
243
kidney
159
bone element
154
vasculature
151
blood vessel
117
artery
68
blood
68
bodily fluid
67
brain
54
eye
37
limb
30
musculature of body
25
embryo
20
lung
18
spleen
17
nerve
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
37
AMP-T2D consortium
target.investigated_as!
histone modification
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
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