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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
12
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
41
DNA accessibility
12
DNA binding
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
32
June, 2019
18
October, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
May, 2019
Available data
58
bam
41
bed narrowPeak
40
bigWig
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
34
bigBed narrowPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
64
Homo sapiens
Biosample type
64
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
46
GRCh38
45
hg19
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
organ_slims!
artery
BIOSAMPLE
ASSAY
64 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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