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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
22
ChIP-seq
12
total RNA-seq
9
ATAC-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
22
DNA binding
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
76
histone
histone modification
50
broad histone mark
26
narrow histone mark
22
control
Date released
35
June, 2019
26
October, 2019
10
July, 2019
7
August, 2017
6
February, 2021
5
March, 2020
4
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
75
bam
51
bigWig
45
bed narrowPeak
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
37
bigBed narrowPeak
15
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
97
Homo sapiens
Biosample type
91
tissue
6
primary cell
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
62
hg19
56
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
97 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
1
4
1
1
1
tibial artery
2
5
1
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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