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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
341
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
341
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
control
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
244
November, 2017
144
May, 2020
53
November, 2018
40
May, 2022
33
December, 2017
24
August, 2021
10
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
526
bigWig
500
bam
360
bed narrowPeak
343
fastq
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
9
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
580
Homo sapiens
Biosample type
323
cell line
245
tissue
10
primary cell
2
in vitro differentiated cells
Organ
742
pancreas
580
liver
571
connective tissue
435
adipose tissue
401
epithelium
312
kidney
271
heart
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
embryo
18
ureter
16
skeleton
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
580
AMP
Genome assembly (visualization)
528
hg19
460
GRCh38
Lab
516
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
control
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
300
14
1
1
2
2
2
1
tissue
liver
37
167
20
2
3
1
1
1
1
1
right lobe of liver
2
3
1
2
1
2
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
2
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