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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
1
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
1
DNA binding
1
DNA methylation
Target of assay
3
histone
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
31
February, 2023
19
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
Available data
31
bed narrowPeak
5
bam
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
774
pancreas
563
connective tissue
439
adipose tissue
422
epithelium
347
liver
313
kidney
278
heart
159
bone element
156
vasculature
152
blood vessel
116
artery
92
brain
73
limb
61
musculature of body
57
eye
22
embryo
20
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
16
skeleton
13
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
32
hg19
4
GRCh38
Lab
57
AMP-T2D consortium
target.investigated_as!
histone modification
transcription factor
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
1
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