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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
42
ATAC-seq
37
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
43
DNA accessibility
37
DNA binding
4
3D chromatin structure
Target of assay
112
histone
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
95
May, 2021
28
August, 2021
26
February, 2021
23
February, 2018
16
February, 2023
9
August, 2017
8
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
175
bam
144
bigWig
131
tsv
43
fastq
22
bed narrowPeak
11
bed bed3+
10
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
233
Homo sapiens
Biosample type
2055
tissue
841
primary cell
263
cell line
233
in vitro differentiated cells
8
stem cell
Organ
38
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
233
AMP
Genome assembly (visualization)
183
hg19
150
GRCh38
4
hg18
Lab
211
AMP-T2D consortium
15
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
233 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
neural progenitor cell
7
10
7
adipocyte
5
8
8
1
1
cardiac precursors (cardiac muscle cell)
19
1
1
embryonic stem cell
7
6
6
1
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