Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
37
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
37
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
histone modification
19
broad histone mark
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
95
May, 2021
26
February, 2021
23
February, 2018
16
August, 2021
14
February, 2023
8
August, 2017
8
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
175
bam
144
bigWig
131
tsv
43
fastq
bed narrowPeak
11
bed bed3+
10
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
211
Homo sapiens
Biosample type
1666
tissue
772
primary cell
246
cell line
211
in vitro differentiated cells
8
stem cell
Organ
35
connective tissue
14
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
211
AMP
Genome assembly (visualization)
161
hg19
132
GRCh38
4
hg18
Lab
193
AMP-T2D consortium
15
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
target.investigated_as!
histone modification
transcription factor
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
211 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
8
7
1
cardiac precursors (cardiac muscle cell)
19
1
embryonic stem cell
7
6
5
1
neural progenitor cell
7
7
+ See 29 more…
See all biosamples
Download