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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
Assay category
118
DNA binding
Target of assay
histone modification
986
histone
504
transcription factor
499
narrow histone mark
486
broad histone mark
331
control
111
RNA binding protein
82
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
81
November, 2017
23
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
118
bam
118
fastq
117
bed narrowPeak
117
bigWig
115
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
112
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
105
liver
10
blood
10
bodily fluid
kidney
2
connective tissue
1
epithelium
Project
118
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
118
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone modification
organ_slims!
kidney
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
cell line
HepG2
102
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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