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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
32
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
32
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
693
February, 2021
368
November, 2017
318
August, 2017
301
May, 2021
232
August, 2021
214
May, 2020
207
June, 2019
168
July, 2018
151
October, 2019
123
May, 2022
102
February, 2023
102
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
57
April, 2019
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
44
September, 2018
35
December, 2018
31
February, 2018
31
November, 2019
27
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
13
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
123
tsv
57
txt
34
bigWig
30
bam
19
bed narrowPeak
15
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
231
Homo sapiens
Biosample type
165
tissue
42
cell line
23
in vitro differentiated cells
2
primary cell
Organ
92
heart
66
kidney
31
liver
8
embryo
6
blood vessel
6
vasculature
4
epithelium
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
232
AMP
Genome assembly (visualization)
37
hg19
22
GRCh38
Lab
132
AMP-T2D consortium
64
Katalin Susztak, Upenn
34
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
narrow histone mark
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
232 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
primary cell
hepatocyte
2
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